Open source high-throughput single cell data analysis and biomarker discovery

Exciting news!! Biomage has been acquired by Parse Biosciences!

As a result, the Biomage-hosted instance of Cellenics is being rebranded as Trailmaker! Read more on our blog post.

Find out more about scalable single cell technology that doesn’t require an instrument at the Parse Biosciences website.

Turn your single-cell RNA sequencing data into meaningful insight with Cellenics® software

Biomage host a community instance of Cellenics®, an open-source analytics tool for single-cell RNA sequencing data that has been developed at Harvard Medical School.

  • It’s fast, interactive, and user-friendly.

  • It enables biologists to explore single-cell datasets without writing code and helps scientists and bioinformaticians to work together more effectively.

  • It takes you from count matrices to publication-ready figures in just a few hours and can be integrated seamlessly with your workflow.

  • And it’s cloud-based, secure, and scaleable.

Cellenics® speeds up the time to biological insight

Biomage-hosted community instance of Cellenics® is free for academic researchers

  • The Biomage-hosted community instance of Cellenics® is free for academic researchers with small/medium-sized datasets (up to 500,000 cells)

  • It’s used by 3000+ academic researchers studying cancer, cardiovascular health, and developmental biology

  • There are several pre-print articles and 40+ manuscripts in preparation that use the Biomage-hosted community instance of Cellenics®

Join the Biomage community of Cellenics® users.

Course: Mastering Single Cell RNA-seq Data Analysis with Cellenics®

This comprehensive course is designed to equip you with the knowledge and skills needed to analyze single cell RNA-seq data using Cellenics®. From data uploading and processing to integration, exploration, and visualization, we will cover everything you need to know to become an expert in single cell RNA-seq data analysis.

Included in the online course: video lessons that you can watch at your own pace + PDF course material + 30-minute personalised session with one of our bioinformaticians + optional live group sessions

This course is provided by Biomage. More information about the course is available here!

With the bespoke Biomage package of data analysis software and support services, we work with growing biotechs & leading pharmaceuticals to provide a fully customized and scaleable end-to-end solution for your single-cell RNA sequencing data analysis workflow.

  • Private and secure deployment of Cellenics® on your infrastructure

  • Integration of Cellenics® software with your existing data storage and pipelining tools

  • Technical support for the maintenance of your Cellenics® instance and access to new features

  • Tailored support and training for bioinformaticians, data scientists and wet-lab biologists

  • Feature development opportunities for a fully integrated and customized data analysis solution

Private Cellenics® deployment & fully customized support service

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Book a demo or find out more. We can save you hundreds of hours of analysis time.

Papers that cite the Biomage-hosted instance of Cellenics®

Want to read about the publications that have used the Biomage-hosted community instance of Cellenics® for their data analysis? Read a selection below!

What members of the Biomage community of Cellenics® users are saying:

  • “Cellenics® has dramatically reduced the learning curve for exploring single cell RNA-seq datasets. As a student, it has allowed improved communication between my mentor and myself while processing, visualizing, and exploring our dataset. This saves a tremendous amount of time.”

    Dr Sawyer Hicks, University at Albany

  • “Cellenics® is a brilliant tool for analysing single cell RNAseq data for novices. It takes the pain out of QC and pre-processing of raw count data, with an easy-to-use graphical user interface without the pain of having to learn R. Once the data is processed, Cellenics® allows data interrogation and visualization in many different ways. This makes it quick and easy to generate publication-quality graphics files in a variety of file formats for inclusion in grant applications or manuscripts.”

    Assistant Prof Duncan Sparrow, University of Oxford

  • “Cellenics® is great - it will be a really useful analytical tool for the scRNA-seq community, both for novice users and for labs like mine that already do their own analysis with Seurat.”

    Prof John Campbell, University of Virginia

  • “I attended yesterday’s seminar regardingthe Biomage-hosted instance of Cellenics® and was quite impressed about this tool. This seminar was actually delivered in a really good timing for me since I was about to start watching a lot of tutorials to learn how to use R and Seurat to analyze 10x Genomics data that we just received. So, you can imagine how happy I am to be able to skip all that and just go ahead and analyze my data!”

    Antonio Solis, Texas Biomedical Research Institute

  • I would like to thank you and your team for the kind support and for building such a helpful tool. After using the Biomage-hosted community instance of Cellenics® for a few days, I was able to analyze the data without any prior knowledge of single-cell RNA sequencing data analysis.

    Dinuka Adasooriya

Meet our team

At Biomage, we are deeply passionate about the goal of improving human health. We are achieving this goal by enabling scientific researchers to discover new drug targets and answer deep biological questions from transcriptomics data.

Our expert team of bioinformaticians, software engineers and scientists take away technical difficulties and bring clarity to 'big data' using accessible and intuitive tools.

Learn more about our team members